The EQ is fubar. If the manual coords don't work you'll need to discover why she's inverting the X and Y axis. When I use the pic tool to select a position near the right front dorsal phaser, the property goes to the left nacelle. The farther up the bow I make it, the further aft the MPE puts it, and so forth. Luckily I can do phaserbanks manually just as good. Took me less that 5 min for the dorsal fwd's. Moving on...This may yet be a 20 min job.
Ship finished. I trashed all your arc angles though, but those are easy to fix. Just keep yur fingers off the 9 slots on the upper left of the first tab on the phaser window and you'll be fine. Assuming the xyz issue doesn't fubar the whole job.