It has took me awhile to even understand it but for the past several weeks I have been putting together a huge pack of the best of BC mods, over 200 ships, all bridges that work seperatly and just about every Tech mod you can think of, so I have had to move things and modify thing to get them all to work without BC crashing, but to answer your question Im teaching myself and so far had more sucsess than fails.
Im just not sure what to look at to tell multiplayer to run mods.