Im still in process , to try and determine, Why this is happening, any help would be Nice, but I bet this has not been encountered before.
Edit: it seems as tho the MissionPlacements.py does nothing, when I had saved one for Junkyard, It saved a MissionPlacements.py in Main folder, I moved it into JYrd, not even a pyc was created, when I warped to Junkyard. HMMM , Still wonder Why tho, it even exists when I try to save a region [plantery system].
Theroy; Mite be something that was going to be in BC, but the developers didnt for one reason or other.