So, I have installed a vanilla copy of the game and dumped Foundation on top of it. I then installed ATP:D.
I activated the new mutators.
When I try to load any of the new ships, the game crashes, and none of the features I remember being excited about (such as the galaxy map) are listed in the crew's menus.
I also tried installing this on top of a copy of my modded-up Kobyashi Maru install, thinking maybe it needed something else to hook into... no success.
Does this have any particular requirements? Is there a readme floating around?