Hi,
Thanks for the hints and for the welcome.
As I said, it's been a REALLY long time since I've played that game.
When I started up bridge commander, I could have sworn at first that I found it.
My first guess would be that it wasn't Klingon academy since I was flying a federation ship.
All controls were done with clicks, issueing commands to your officers like in bridge commander.
I'll have a peek to see if I can find some screenshots of the navigation module in starfleet command, I think I should recognise that part.
I have very little to go on, except the spacefaring creature, the fact that the navigation betwee star systems was more complex than in BC and the fact that I had my ass handed to me in the last mission I played.... Enemies (possibly Klingon) had destroyed half my ship, including warp drive, leaving me stranded, limping and fleeing for my life on nothing but impulse drives.
Edit: standard view was also the same as Bridge commander, ie. you errr.. commanded.. from the bridge.
Edit 2: At least, that's how I remember it...