I think it's just a matter of uploading the file again, tagged as an update, and BCfiles' system will deprecate the original file.
please don't do that. it is a lot easier to move a file then to update and replace it. Like Jimmy said, if you need us to move a file, just PM one of us, or point it out like Wiley did in the forum, we'll fix it right away. Do not re-upload a file unless you've actually made changes to it.
Speaking of which, the JJprise is being moved right now.
As for the download issues, it seems that Filefront is having some issues today, try again later.