Nobody's figured out how to do an actual colored transparent texture, to my knowledge, so yeah, the bussards are going to be clear with the blue fans behind them.
Baz, now that the grid lines are in place, comparing with my DVD model of the Enterprise, the name and registry ARE correct, I apologize for doubting you.
Sad that you're taking a break, but I honestly can't say I didn't see it coming or that I blame you. Considering how much work you put in on the textures for THIS thing the first go round before the hard drive crash, I wouldn't have blamed you for saying "screw it" and not even starting over. Honestly, unless someone CAN pull the Enterprise model out of the PC version of the Star Trek game and actually take the time to go over it and fix any minor imperfections(the game model doesn't have NCC-1701 under the shuttle doors for instance), this IS the best JJ-Enterprise we're getting until ILM stops being stingy and gives us the orthos. Heck, I even tried emailing Ryan Church, never heard back. Either way Baz, take a well deserved break, hopefully whatever you give us next will blow our minds.