:eek Oh man, I'm such an idiot! The reason the ship properties are not loading right in MPE was because I kept loading the ship's .PY file and not the ships HP file. Thanks Tiq for the link, helped clear out another question I have for quite some time about making docking possible for non-dockable stations(it's patricaly the same as scripting a ship to launch shuttles isn't it)anyways I saved the page for further future reference, I have a feeling I'm going to need it again.
Okay here's the ships HP file, the additions I made is towards the end of the file. I had an idea last night about salvaging the ship's original shuttle bays that the NX model came with and see if they can launch with a taylored OEP entry driving them, I'll post back to see if it works......