So has this problem been solved yet? (And I'm referring to the issue in the original post, not the issue with NanoFX)
I too am trying to get a 1.1 install with Basic Foundation and QB Autostart 0.9 to work with single player. What exactly in QBA and Foundation screws up SP? Is it something small that can be removed? Or is there something in the SP scripts that can be changed to remove conflicts?